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All Annotated Sequence Features
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- Tracks
- Annotations for SGD curated features
   
3-frame translation (forward) Genomic Clones ResGen primers
3-frame translation (reverse) Non-coding RNA Genes Telomere, Centromere and ARS elements
All Annotated Sequence Features Protein-coding Genes Transposons & Long Terminal Repeats
DNA/GC Content ResGen primer products  
- Chromatin structure
- DNase I hypersensitive sites
   
Digital genomic footprinting: Hesselberth et al. (2009)   
- Histone modifications
   
Histone modifications (chrIII & other promoters): Liu et al. (2005) [2 of 15 subtracks selected] Histone modifications: Kirmizis et al. (2007) [2 of 18 subtracks selected] Histone modifications: Schulze et al. (2011) [5 of 14 subtracks selected]
Histone modifications: Guillemette et al. (2011) [4 of 4 subtracks selected] Histone modifications: Pokholok et al. (2005) [10 of 19 subtracks selected] 
- Histone variants
   
H2AZ Nucleosome occupancy: Guillemette et al. (2005) [3 of 3 subtracks selected] H2AZ Nucleosome positions: Albert et al. (2007)  
- Nucleosome organization
   
Nucleosome occupancy: Field et al. (2008) [3 of 3 subtracks selected] Nucleosome occupancy: Lee et al. (2007) [2 of 2 subtracks selected] 
Nucleosome occupancy: Kaplan et al. (2009) [7 of 7 subtracks selected] Nucleosome positions: Mavrich et al. (2008)  
- Gene Structure
- Gene Models
- Introns
   
Intron tiling array log2 ratios, dbr1/DBR1+: Zhang et al. (2007) Verified introns: Nagalakshmi et al. (2008)  
- TSS
   
Transcription start sites: Zhang and Dietrich (2005)   
- UTRs
   
3' end processing: Johnson et al. (2011) [4 of 4 subtracks selected] 5' and 3' UTRs: Yassour et al. (2009)  
5' and 3' UTRs: Nagalakshmi et al. (2008) Polyadenylation sites: Ozsolak et al. (2010)  
- CDNA
   
cDNA transcripts: Miura et al. (2006)   
- RNA Expression Profiling
- Cell Cycle
   
Mitotic transcriptome: Granovskaia et al. (2010)   
- Unannotated
- RNA-seq
   
Unannotated transcripts: Nagalakshmi et al. (2008)   
- Tiling Array
   
Unannotated transcripts: Xu et al. (2009)   
- mRNA
- RNA-seq
   
Differential RNA Expression: Waern & Snyder (2013) [17 of 17 subtracks selected] Transcribed regions (ab initio): Yassour et al. (2009)  
- SAGE
   
SAGE tags: Velculescu et al. (1997)   
- Tiling Array
   
Known transcripts: Xu et al. (2009) Transcribed regions (polyA RNA): David et al. (2006) Transcribed regions (total RNA): David et al. (2006)
- ncRNA
- RNA-seq
   
Antisense ncRNA: Yassour et al. (2010) xrn1&Delta/WT log2 RNAPII occupancy: van Dijk et al. (2011) Xrn1-sensitive unstable transcripts (XUTs): van Dijk et al. (2011)
- SAGE
   
CUTs and other transcripts: Neil et al. (2009)   
- Tiling Array
   
CUTs: Xu et al. (2009) Meiotic ncRNAs: Lardenois et al. (2011) SUTs: Xu et al. (2009)
- Replication and Recombination
- Meiotic Recombination
   
Double strand break hotspots: Buhler et al. (2007) [3 of 3 subtracks selected] Recombination Events: Qi et al. (2009)  
Double strand break hotspots: Pan et al. (2011) Recombination Hotspots: Mancera et al. (2008)  
- Origins of Replication
   
Known and predicted ARSs and ACSs: Xu et al. (2006) Nucleosome positions: Eaton et al. (2010) [1 of 4 subtracks selected] 
MCM2 and ORC ChIP chip: Xu et al. (2006) [2 of 2 subtracks selected] ORC-ARS consensus sequences: Eaton et al. (2010)  
- Other
   
RNA secondary structure score (PARS): Kertesz et al. (2010) RNAs with secondary structure: Kertesz et al. (2010)  
- Transcription Regulation
-  mRNA export
   
mRNA export factors ChIP-chip: Johnson et al. (2011) [3 of 3 subtracks selected]  
- Other
   
uORFs: Ingolia et al. (2009)   
- RNA Pol II ChIP
   
Pol II & associated factors occupancy: Mayer et al. (2010) [4 of 19 subtracks selected] Pol II CTD phosphorylation & associated factors occupancy: Kim et al. (2010) [4 of 12 subtracks selected] Pol II occupancy: Steinmetz et al. (2006) [1 of 2 subtracks selected]
- RNA Pol III ChIP
   
Pol II, Pol III & TFIIS occupancy: Ghavi-Helm et al. (2008) [4 of 15 subtracks selected]  
- Transcription Factors
   
Adr1 and Cat8 ChIP chip: Tachibana et al. (2005) TATA elements (ChIP-exo): Rhee et al. (2012) Transcription-related factors (ChIP-exo): Rhee et al. (2011) [4 of 4 subtracks selected]
SGD PWM-predicted motifs TF ChIP chip: MacIsaac et al. (2006) Transcription-related factors ChIP chip: Venters et al. (2011) [1 of 404 subtracks selected]
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